all repos — litestore @ f7ced18ec6fa373d59cc3757efc359e1738a4cfc

A minimalist nosql document store.

lib/core.nim

 1
 2
 3
 4
 5
 6
 7
 8
 9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
import 
  sqlite3, 
  db_sqlite as db,
  strutils, 
  os,
  oids,
  json,
  pegs, 
  strtabs,
  strutils,
  base64,
  math
import
  types,
  contenttypes,
  queries,
  logger,
  utils

# Manage Datastores

var LS_TRANSACTION = false

proc createIndexes(db: TDbConn) =
  db.exec SQL_CREATE_INDEX_DOCUMENTS_DOCID
  db.exec SQL_CREATE_INDEX_DOCUMENTS_ID
  db.exec SQL_CREATE_INDEX_TAGS_TAG_ID
  db.exec SQL_CREATE_INDEX_TAGS_DOCUMENT_ID

proc dropIndexes(db: TDbConn) = 
  db.exec SQL_DROP_INDEX_DOCUMENTS_DOCID
  db.exec SQL_DROP_INDEX_DOCUMENTS_ID
  db.exec SQL_DROP_INDEX_TAGS_TAG_ID
  db.exec SQL_DROP_INDEX_TAGS_DOCUMENT_ID

proc createDatastore*(file:string) = 
  if file.fileExists():
    raise newException(EDatastoreExists, "Datastore '$1' already exists." % file)
  LOG.debug("Creating datastore '$1'", file)
  let data = db.open(file, "", "", "")
  LOG.debug("Creating tables")
  data.exec(SQL_CREATE_DOCUMENTS_TABLE)
  data.exec(SQL_CREATE_SEARCHDATA_TABLE)
  data.exec(SQL_CREATE_TAGS_TABLE)
  LOG.debug("Creating indexes")
  data.createIndexes()
  LOG.debug("Database created")

proc closeDatastore*(store:Datastore) = 
  try:
    db.close(store.db)
  except:
    raise newException(EDatastoreUnavailable, "Datastore '$1' cannot be closed." % store.path)

proc destroyDatastore*(store:Datastore) =
  try:
    if store.path.fileExists():
      store.closeDataStore()
      store.path.removeFile()
  except:
    raise newException(EDatastoreUnavailable, "Datastore '$1' cannot destroyed." % store.path)

proc openDatastore*(file:string): Datastore =
  if not file.fileExists:
    raise newException(EDatastoreDoesNotExist, "Datastore '$1' does not exists." % file)
  try:
    result.db = db.open(file, "", "", "")
    # Register custom function & PRAGMAs
    LOG.debug("Registering custom functions...")
    discard result.db.create_function("rank", -1, SQLITE_ANY, cast[pointer](SQLITE_DETERMINISTIC), okapi_bm25f_kb, nil, nil)
    LOG.debug("Executing PRAGMAs...")
    discard result.db.tryExec("PRAGMA locking_mode = exclusive".sql)
    discard result.db.tryExec("PRAGMA page_size = 4096".sql)
    discard result.db.tryExec("PRAGMA cache_size = 10000".sql)
    LOG.debug("Done.")
    result.path = file
    result.mount = ""
  except:
    raise newException(EDatastoreUnavailable, "Datastore '$1' cannot be opened." % file)

proc hasMirror(store: Datastore): bool =
  return store.mount.len > 0

proc begin(store: Datastore) =
  if not LS_TRANSACTION:
    LOG.debug("Beginning transaction")
    LS_TRANSACTION = true
    store.db.exec("BEGIN".sql)

proc commit(store: Datastore) =
  if LS_TRANSACTION:
    LOG.debug("Committing transaction")
    LS_TRANSACTION = false
    store.db.exec("COMMIT".sql)

proc rollback(store: Datastore) =
  if LS_TRANSACTION:
    LOG.debug("Rolling back transaction")
    LS_TRANSACTION = false
    store.db.exec("ROLLBACK".sql)

# Manage Tags

proc createTag*(store: Datastore, tagid, documentid: string, system=false) =
  if tagid.match(PEG_USER_TAG) or system and tagid.match(PEG_TAG):
    store.db.exec(SQL_INSERT_TAG, tagid, documentid)
  else:
    raise newException(EInvalidTag, "Invalid Tag: $1" % tagid)

proc destroyTag*(store: Datastore, tagid, documentid: string, system=false): int64 =
  if tagid.match(PEG_USER_TAG) or system and tagid.match(PEG_TAG):
    return store.db.execAffectedRows(SQL_DELETE_TAG, tagid, documentid)
  else:
    raise newException(EInvalidTag, "Invalid Tag: $1" % tagid)

proc retrieveTag*(store: Datastore, id: string, options: QueryOptions = newQueryOptions()): string =
  var options = options
  options.single = true
  var query = prepareSelectTagsQuery(options)
  var raw_tag = store.db.getRow(query.sql, id)
  return $(%[("id", %raw_tag[0]), ("documents", %(raw_tag[1].parseInt))])

proc retrieveTags*(store: Datastore, options: QueryOptions = newQueryOptions()): string =
  var query = prepareSelectTagsQuery(options)
  var raw_tags = store.db.getAllRows(query.sql)
  var tags = newSeq[JsonNode](0)
  for tag in raw_tags:
    tags.add(%[("id", %tag[0]), ("documents", %(tag[1].parseInt))])
  return $(%tags)

proc countTags*(store: Datastore): int64 =
  return store.db.getRow(SQL_COUNT_TAGS)[0].parseInt

proc retrieveTagsWithTotals*(store: Datastore): JsonNode =
  var data = store.db.getAllRows(SQL_SELECT_TAGS_WITH_TOTALS)
  var tag_array = newSeq[JsonNode](0)
  for row in data:
    var obj = newJObject()
    obj[row[0]] = %row[1].parseInt
    tag_array.add(obj)
  return %tag_array

# Manage Documents

proc retrieveRawDocument*(store: Datastore, id: string, options: QueryOptions = newQueryOptions()): string =
  var options = options
  options.single = true
  var select = prepareSelectDocumentsQuery(options)
  var raw_document = store.db.getRow(select.sql, id)
  if  raw_document[0] == "":
    return ""
  else:
    return $store.prepareJsonDocument(raw_document, options.select)

proc createDocument*(store: Datastore,  id="", rawdata = "", contenttype = "text/plain", binary = -1, searchable = 1): string =
  let singleOp = not LS_TRANSACTION
  var id = id
  var contenttype = contenttype.replace(peg"""\;(.+)$""", "") # Strip charset for now
  var binary = checkIfBinary(binary, contenttype)
  var searchable = searchable
  if binary == 1:
    searchable = 0
  var data = rawdata
  if id == "":
    id = $genOid()
  # Store document
  try:
    store.begin()
    var res = store.db.insertID(SQL_INSERT_DOCUMENT, id, data, contenttype, binary, searchable, currentTime())
    if res > 0:
      if binary <= 0 and searchable >= 0:
        # Add to search index
        store.db.exec(SQL_INSERT_SEARCHCONTENT, res, id, data.toPlainText)
      store.addDocumentSystemTags(id, contenttype)
      if store.hasMirror and id.startsWith(store.mount):
        # Add dir tag
        store.createTag("$dir:"&store.mount, id, true)
        var filename = id.unixToNativePath
        if not fileExists(filename):
          filename.parentDir.createDir
          filename.writeFile(rawdata)
        else:
          raise newException(EFileExists, "File already exists: $1" % filename)
    if singleOp:
      store.commit()
    return $store.retrieveRawDocument(id)
  except:
    store.rollback()
    eWarn() 
    raise

proc updateDocument*(store: Datastore, id: string, rawdata: string, contenttype = "text/plain", binary = -1, searchable = 1): string =
  let singleOp = not LS_TRANSACTION
  var contenttype = contenttype.replace(peg"""\;(.+)$""", "") # Strip charset for now
  var binary = checkIfBinary(binary, contenttype)
  var data = rawdata
  var searchable = searchable
  if binary == 1:
    searchable = 0
  try:
    store.begin()
    var res = store.db.execAffectedRows(SQL_UPDATE_DOCUMENT, data, contenttype, binary, searchable, currentTime(), id)
    if res > 0:
      if binary <= 0 and searchable >= 0:
        store.db.exec(SQL_UPDATE_SEARCHCONTENT, data.toPlainText, id)
      if store.hasMirror and id.startsWith(store.mount):
        var filename = id.unixToNativePath
        if fileExists(filename):
          filename.writeFile(rawdata)
        else:
          raise newException(EFileNotFound, "File not found: $1" % filename)
      result = $store.retrieveRawDocument(id)
    else:
      result = ""
    if singleOp:
      store.commit()
  except:
    eWarn()
    store.rollback()
    raise

proc setDocumentModified*(store: Datastore, id: string): string =
  store.db.exec(SQL_SET_DOCUMENT_MODIFIED, id, currentTime())

proc destroyDocument*(store: Datastore, id: string): int64 =
  try:
    let singleOp = not LS_TRANSACTION
    store.begin()
    result = store.db.execAffectedRows(SQL_DELETE_DOCUMENT, id)
    if result > 0:
      store.db.exec(SQL_DELETE_SEARCHCONTENT, id)
      store.db.exec(SQL_DELETE_DOCUMENT_TAGS, id)
      if store.hasMirror and id.startsWith(store.mount):
        var filename = id.unixToNativePath
        if fileExists(filename):
          removeFile(id.unixToNativePath)
        else:
          raise newException(EFileNotFound, "File not found: $1" % filename)
    if singleOp:
      store.commit()
  except:
    eWarn()
    store.rollback()

proc retrieveDocument*(store: Datastore, id: string, options: QueryOptions = newQueryOptions()): tuple[data: string, contenttype: string] =
  var options = options
  options.single = true
  var select = prepareSelectDocumentsQuery(options)
  var raw_document = store.db.getRow(select.sql, id)
  if raw_document[0] == "":
    return (data: "", contenttype: "")
  else:
    if raw_document[3].parseInt == 1:
      return (data: raw_document[1].decode, contenttype: raw_document[2])
    else:
      return (data: raw_document[1], contenttype: raw_document[2])

proc retrieveRawDocuments*(store: Datastore, options: var QueryOptions = newQueryOptions()): JsonNode =
  var select = prepareSelectDocumentsQuery(options)
  var raw_documents = store.db.getAllRows(select.sql)
  var documents = newSeq[JsonNode](0)
  for doc in raw_documents:
    documents.add store.prepareJsonDocument(doc, options.select)
  return %documents

proc countDocuments*(store: Datastore): int64 =
  return store.db.getRow(SQL_COUNT_DOCUMENTS)[0].parseInt

proc importFile*(store: Datastore, f: string, dir = "") =
  if not f.fileExists:
    raise newException(EFileNotFound, "File '$1' not found." % f)
  let ext = f.splitFile.ext
  var d_id = f.replace("\\", "/")
  var d_contents = f.readFile
  var d_ct = "application/octet-stream"
  if CONTENT_TYPES.hasKey(ext):
    d_ct = CONTENT_TYPES[ext].replace("\"", "")
  var d_binary = 0
  var d_searchable = 1
  if d_ct.isBinary:
    d_binary = 1
    d_searchable = 0
    d_contents = d_contents.encode(d_contents.len*2) # Encode in Base64.
  let singleOp = not LS_TRANSACTION
  store.begin()
  try:
    discard store.createDocument(d_id, d_contents, d_ct, d_binary, d_searchable)
    if dir != "":
      store.db.exec(SQL_INSERT_TAG, "$dir:"&dir, d_id)
  except:
    store.rollback()
    eWarn()
    raise
  if singleOp:
    store.commit()

proc optimize*(store: Datastore) =
  try:
    store.begin()
    LOG.debug("Reindexing columns...")
    store.db.exec(SQL_REINDEX)
    LOG.debug("Rebuilding full-text index...")
    store.db.exec(SQL_REBUILD)
    LOG.debug("Optimixing full-text index...")
    store.db.exec(SQL_OPTIMIZE)
    store.commit()
    LOG.debug("Done")
  except:
    eWarn()

proc vacuum*(file: string) =
  let data = db.open(file, "", "", "")
  try:
    data.exec(SQL_VACUUM)
    db.close(data)
  except:
    eWarn()
    quit(203)
  quit(0)

proc importDir*(store: Datastore, dir: string) =
  # TODO: Only allow directory names (not paths)?
  var files = newSeq[string]()
  if not dir.dirExists:
    raise newException(EDirectoryNotFound, "Directory '$1' not found." % dir)
  for f in dir.walkDirRec():
    if f.existsDir:
      continue
    if f.splitFile.name.startsWith("."):    
      # Ignore hidden files
      continue
    files.add(f)
  # Import single files in batch
  let batchSize = 50
  let nBatches = ceil(files.len/batchSize).toInt
  var cFiles = 0
  var cBatches = 0
  store.begin()
  LOG.info("Importing $1 files in $2 batches", files.len, nBatches)
  LOG.debug("Dropping column indexes...")
  store.db.dropIndexes()
  for f in files: 
    try:
      store.importFile(f, dir)
      cFiles.inc
      if (cFiles-1) mod batchSize == 0:
        cBatches.inc
        store.commit()
        LOG.info("Importing batch $1/$2...", cBatches, nBatches)
        store.begin()
    except:
      LOG.warn("Unable to import file: $1", f)
      eWarn()
      store.rollback()
  LOG.debug("Recreating column indexes...")
  store.db.createIndexes()
  store.commit()
  LOG.info("Imported $1/$2 files", cFiles, files.len)

proc  exportDir*(store: Datastore, dir: string) =
  let docs = store.db.getAllRows(SQL_SELECT_DOCUMENTS_BY_TAG, "$dir:"&dir)
  for doc in docs:
    let file = doc[0].unixToNativePath
    var data: string
    if doc[3].parseInt == 1:
      data = doc[1].decode
    else:
      data = doc[1]
    file.parentDir.createDir
    file.writeFile(data)

proc  deleteDir*(store: Datastore, dir: string) =
    store.db.exec(SQL_DELETE_DOCUMENTS_BY_TAG, "$dir:"&dir)
    store.db.exec(SQL_DELETE_SEARCHDATA_BY_TAG, "$dir:"&dir)
    store.db.exec(SQL_DELETE_TAGS_BY_TAG, "$dir:"&dir)

proc mountDir*(store: var Datastore, dir:string, reset=false) =
  if not dir.dirExists:
    raise newException(EDirectoryNotFound, "Directory '$1' not found." % dir)
  if reset:
    store.deleteDir(dir)
    store.importDir(dir)
  store.mount = dir

proc destroyDocumentsByTag*(store: Datastore, tag: string): int64 =
  result = 0
  var ids = store.db.getAllRows(SQL_SELECT_DOCUMENT_IDS_BY_TAG, tag)
  for id in ids:
    result.inc(store.destroyDocument(id[0]).int)